LOC_Os09g31019.1

Description : Ubiquitin supergroup;Ribosomal protein L40e

Gene families : OG_01_0000003 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000003_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os09g31019.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os09g31019.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_187
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_63

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISM	GOs from InterProScan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	ISM	GOs from InterProScan
BP	GO:0006412	translation	ISM	GOs from InterProScan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR038587	Ribosomal_eL40_sf	Gene3D	86	133
IPR001975	Ribosomal_eL40_dom	SMART	83	134
IPR019956	Ubiquitin_dom	PRINTS	32	52
IPR019956	Ubiquitin_dom	PRINTS	53	74
IPR019956	Ubiquitin_dom	PRINTS	11	31
IPR029071	Ubiquitin-like_domsf	SUPERFAMILY	1	76
IPR000626	Ubiquitin-like_dom	Pfam	3	74
IPR011332	Ribosomal_zn-bd	SUPERFAMILY	82	135
IPR001975	Ribosomal_eL40_dom	Pfam	85	132
IPR000626	Ubiquitin-like_dom	ProSiteProfiles	1	76
IPR000626	Ubiquitin-like_dom	SMART	1	72
IPR019954	Ubiquitin_CS	ProSitePatterns	27	52

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os09g31019.1

Expression Profile

Co-expression Networks

Functional Annotation