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Description : pumilio 1
Gene families : OG_01_0005491 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005491_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os09g32210.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os09g32210.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_105 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR033712 | Pumilio_RNA-bd | CDD | 646 | 967 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 687 | 722 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 723 | 758 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 795 | 831 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 868 | 903 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 651 | 686 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 759 | 794 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 832 | 867 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 910 | 945 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 795 | 831 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 723 | 758 |
| IPR016024 | ARM-type_fold | SUPERFAMILY | 647 | 968 |
| IPR011989 | ARM-like | Gene3D | 634 | 975 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 651 | 686 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 904 | 945 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 868 | 903 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 687 | 722 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 832 | 867 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 759 | 794 |
| IPR033133 | PUM-HD | ProSiteProfiles | 631 | 971 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 918 | 945 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 727 | 760 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 872 | 906 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 799 | 834 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 691 | 724 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 769 | 793 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 655 | 689 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 840 | 869 |
No CAZYmes available for this sequence
| No external refs found! |