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  5. LOC_Os09g33980.1

LOC_Os09g33980.1


Description : cell division cycle protein 48-related / CDC48-related


Gene families : OG_01_0004870 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004870_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os09g33980.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os09g33980.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_267
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_201


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0005524 ATP binding ISM GOs from InterProScan
MF GO:0016887 ATP hydrolysis activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR041569 AAA_lid_3 Pfam 564 600
IPR001487 Bromodomain Pfam 890 961
IPR001487 Bromodomain PRINTS 912 928
IPR001487 Bromodomain PRINTS 659 672
IPR001487 Bromodomain PRINTS 946 965
IPR001487 Bromodomain PRINTS 928 946
IPR001487 Bromodomain ProSiteProfiles 903 965
IPR027417 P-loop_NTPase SUPERFAMILY 361 623
IPR036427 Bromodomain-like_sf SUPERFAMILY 876 992
IPR027417 P-loop_NTPase SUPERFAMILY 681 914
IPR003959 ATPase_AAA_core Pfam 401 536
IPR036427 Bromodomain-like_sf Gene3D 872 1001
IPR045199 ATAD2-like PANTHER 10 1188
IPR003960 ATPase_AAA_CS ProSitePatterns 506 524
IPR027417 P-loop_NTPase Gene3D 360 630
IPR001487 Bromodomain SMART 880 987
IPR003593 AAA+_ATPase SMART 397 538

No CAZYmes available for this sequence

No external refs found!