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  5. LOC_Os09g34010.1

LOC_Os09g34010.1


Description : Translation initiation factor 2, small GTP-binding protein


Gene families : OG_01_0006811 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006811_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os09g34010.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os09g34010.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_350
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_214


Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity ISM GOs from InterProScan
MF GO:0003924 GTPase activity ISM GOs from InterProScan
MF GO:0005525 GTP binding ISM GOs from InterProScan
BP GO:0006413 translational initiation ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000178 TF_IF2_bacterial-like TIGRFAM 167 700
IPR036925 TIF_IF2_dom3_sf Gene3D 491 596
IPR036925 TIF_IF2_dom3_sf SUPERFAMILY 488 602
IPR027417 P-loop_NTPase SUPERFAMILY 191 364
IPR023115 TIF_IF2_dom3 Pfam 480 586
IPR027417 P-loop_NTPase Gene3D 193 367
IPR009000 Transl_B-barrel_sf SUPERFAMILY 599 701
IPR009000 Transl_B-barrel_sf SUPERFAMILY 369 451
IPR000795 T_Tr_GTP-bd_dom Pfam 200 356
IPR005225 Small_GTP-bd_dom TIGRFAM 198 351
IPR000795 T_Tr_GTP-bd_dom ProSiteProfiles 195 365
IPR000178 TF_IF2_bacterial-like Hamap 4 702
IPR044145 IF2_II CDD 371 466
IPR015760 TIF_IF2 PANTHER 67 707

No CAZYmes available for this sequence

No external refs found!