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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0016106 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016106_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os09g34870.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os09g34870.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_385 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_182 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 321 | 355 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 454 | 488 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 217 | 278 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 189 | 223 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 220 | 267 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 453 | 501 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 92 | 126 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 222 | 255 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 456 | 489 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 94 | 120 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 192 | 219 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 489 | 524 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 42 | 191 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 410 | 520 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 192 | 219 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 324 | 346 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 295 | 319 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 354 | 380 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 602 | 627 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 94 | 120 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 279 | 409 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 595 | 629 |
No CAZYmes available for this sequence
| No external refs found! |