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  5. LOC_Os09g36090.1

LOC_Os09g36090.1


Description : DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding


Gene families : OG_01_0002844 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002844_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os09g36090.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os09g36090.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_267
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_9


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011011 Znf_FYVE_PHD SUPERFAMILY 439 521
IPR035445 GYF-like_dom_sf Gene3D 1215 1271
IPR003121 SWIB_MDM2_domain ProSiteProfiles 728 811
IPR003121 SWIB_MDM2_domain Pfam 736 809
IPR001965 Znf_PHD SMART 475 521
IPR004343 Plus-3_dom ProSiteProfiles 870 1021
IPR035445 GYF-like_dom_sf SUPERFAMILY 1202 1265
IPR003169 GYF CDD 1213 1270
IPR004343 Plus-3_dom Pfam 875 978
IPR003169 GYF SMART 1214 1269
IPR004343 Plus-3_dom SMART 870 980
IPR036885 SWIB_MDM2_dom_sf Gene3D 721 816
IPR003169 GYF Pfam 1216 1256
IPR036128 Plus3-like_sf Gene3D 872 996
IPR003169 GYF ProSiteProfiles 1213 1267
IPR019835 SWIB_domain SMART 729 814
IPR036128 Plus3-like_sf SUPERFAMILY 871 989
IPR013083 Znf_RING/FYVE/PHD Gene3D 464 567
IPR000571 Znf_CCCH ProSiteProfiles 1736 1764
IPR036855 Znf_CCCH_sf SUPERFAMILY 1736 1764
IPR036885 SWIB_MDM2_dom_sf SUPERFAMILY 727 810

No CAZYmes available for this sequence

No external refs found!