LOC_Os09g36830.1

Description : E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein

Gene families : OG_01_0001811 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001811_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os09g36830.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os09g36830.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_175
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_209

Type	GO Term	Name	Evidence	Source
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR016072	Skp1_comp_dimer	Pfam	126	173
IPR016897	SKP1	PIRSF	1	175
IPR016073	Skp1_comp_POZ	Pfam	10	68
IPR011333	SKP1/BTB/POZ_sf	Gene3D	7	175
IPR011333	SKP1/BTB/POZ_sf	SUPERFAMILY	10	69
IPR036296	SKP1-like_dim_sf	SUPERFAMILY	98	173
IPR016897	SKP1	PANTHER	2	175
IPR001232	SKP1-like	SMART	8	125

No CAZYmes available for this sequence

External Links

No external refs found!