LOC_Os09g38020.1

Description : Histone superfamily protein

Gene families : OG_01_0000389 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000389_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os09g38020.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os09g38020.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_293
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_6

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
MF	GO:0046982	protein heterodimerization activity	ISM	GOs from InterProScan
MF	GO:0046983	protein dimerization activity	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001951	Histone_H4	SMART	16	90
IPR001951	Histone_H4	CDD	18	101
IPR009072	Histone-fold	SUPERFAMILY	3	102
IPR019809	Histone_H4_CS	ProSitePatterns	15	19
IPR009072	Histone-fold	Gene3D	2	103
IPR035425	CENP-T/H4_C	Pfam	39	96
IPR001951	Histone_H4	PRINTS	89	100
IPR001951	Histone_H4	PRINTS	5	16
IPR001951	Histone_H4	PRINTS	77	89
IPR001951	Histone_H4	PRINTS	20	39
IPR001951	Histone_H4	PRINTS	40	60
IPR001951	Histone_H4	PRINTS	62	76

No CAZYmes available for this sequence

External Links

No external refs found!