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  5. LOC_Os10g22950.1

LOC_Os10g22950.1


Description : Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains


Gene families : OG_01_0003223 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003223_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os10g22950.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os10g22950.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_24
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_10


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR014756 Ig_E-set SUPERFAMILY 444 530
IPR000048 IQ_motif_EF-hand-BS ProSiteProfiles 865 888
IPR005559 CG-1_dom SMART 21 139
IPR000048 IQ_motif_EF-hand-BS ProSiteProfiles 841 870
IPR036770 Ankyrin_rpt-contain_sf Gene3D 577 742
IPR002110 Ankyrin_rpt ProSiteProfiles 678 710
IPR036770 Ankyrin_rpt-contain_sf SUPERFAMILY 636 739
IPR000048 IQ_motif_EF-hand-BS SMART 863 885
IPR000048 IQ_motif_EF-hand-BS SMART 840 862
IPR005559 CG-1_dom Pfam 24 137
IPR027417 P-loop_NTPase SUPERFAMILY 838 891
IPR000048 IQ_motif_EF-hand-BS Pfam 842 861
IPR000048 IQ_motif_EF-hand-BS Pfam 866 885
IPR013783 Ig-like_fold Gene3D 438 534
IPR005559 CG-1_dom ProSiteProfiles 18 144
IPR002909 IPT_dom Pfam 444 521

No CAZYmes available for this sequence

No external refs found!