LOC_Os10g28860.1

Description : BTB-POZ and MATH domain 1

Gene families : OG_01_0016743 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016743_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os10g28860.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os10g28860.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_191
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_171

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	ISM	GOs from InterProScan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002083	MATH/TRAF_dom	SMART	31	142
IPR000210	BTB/POZ_dom	Pfam	191	309
IPR000210	BTB/POZ_dom	ProSiteProfiles	200	274
IPR002083	MATH/TRAF_dom	ProSiteProfiles	26	159
IPR011333	SKP1/BTB/POZ_sf	SUPERFAMILY	177	311
IPR000210	BTB/POZ_dom	SMART	200	311
IPR008974	TRAF-like	Gene3D	25	163
IPR002083	MATH/TRAF_dom	CDD	27	160
IPR002083	MATH/TRAF_dom	Pfam	45	145
IPR045005	BPM1-6	PANTHER	12	367
IPR011333	SKP1/BTB/POZ_sf	Gene3D	176	306

No CAZYmes available for this sequence

External Links

No external refs found!