LOC_Os10g30100.1

Description : Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain

Gene families : OG_01_0007156 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007156_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os10g30100.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os10g30100.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_276
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_187

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISM	GOs from InterProScan
MF	GO:0000175	3'-5'-RNA exonuclease activity	ISM	GOs from InterProScan
BP	GO:0000467	exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004527	exonuclease activity	None	Extended
MF	GO:0004532	RNA exonuclease activity	None	Extended
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	ISM	GOs from InterProScan
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008408	3'-5' exonuclease activity	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0016896	RNA exonuclease activity, producing 5'-phosphomonoesters	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031125	rRNA 3'-end processing	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	ISM	GOs from InterProScan
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002121	HRDC_dom	Pfam	480	540
IPR002121	HRDC_dom	SMART	477	557
IPR044876	HRDC_dom_sf	Gene3D	463	556
IPR002562	3'-5'_exonuclease_dom	SMART	261	430
IPR010997	HRDC-like_sf	SUPERFAMILY	460	553
IPR002121	HRDC_dom	ProSiteProfiles	477	557
IPR002562	3'-5'_exonuclease_dom	Pfam	263	428
IPR036397	RNaseH_sf	Gene3D	195	462
IPR012337	RNaseH-like_sf	SUPERFAMILY	196	457
IPR045092	Rrp6-like	PANTHER	114	795

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os10g30100.1

Expression Profile

Co-expression Networks

Functional Annotation