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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0012169 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012169_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os10g33730.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os10g33730.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_297 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_38 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 167 | 207 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 364 | 584 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 218 | 362 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 293 | 327 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 469 | 494 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 369 | 390 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 1 | 59 |
| IPR032867 | DYW_dom | Pfam | 577 | 689 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 9 | 43 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 395 | 429 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 292 | 334 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 8 | 54 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 108 | 149 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 394 | 441 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 97 | 217 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 109 | 143 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 430 | 465 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 144 | 178 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 146 | 180 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 432 | 466 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 295 | 328 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 398 | 430 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 112 | 145 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 12 | 39 |
No CAZYmes available for this sequence
| No external refs found! |