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Description : Pentatricopeptide repeat (PPR-like) superfamily protein
Gene families : OG_01_0012940 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012940_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os10g34310.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os10g34310.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_204 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_10 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 190 | 224 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 438 | 486 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 367 | 415 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 508 | 550 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 189 | 238 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 298 | 346 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 259 | 291 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 104 | 244 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 378 | 496 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 225 | 262 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 403 | 437 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 476 | 503 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 192 | 225 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 440 | 473 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 510 | 543 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 370 | 404 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 228 | 263 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 158 | 191 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 300 | 334 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 335 | 369 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 265 | 297 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 406 | 439 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 438 | 472 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 497 | 565 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 368 | 402 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 245 | 362 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 333 | 367 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 298 | 332 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 263 | 297 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 508 | 542 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 473 | 507 |
No CAZYmes available for this sequence
| No external refs found! |