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  5. LOC_Os10g34370.1

LOC_Os10g34370.1


Description : pentatricopeptide repeat 336


Gene families : OG_01_0012212 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012212_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os10g34370.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os10g34370.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_167
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_29


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 289 321
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 258 292
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 223 257
IPR002885 Pentatricopeptide_rpt Pfam 222 271
IPR011990 TPR-like_helical_dom_sf Gene3D 283 368
IPR011990 TPR-like_helical_dom_sf Gene3D 123 275
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 293 327
IPR002885 Pentatricopeptide_rpt TIGRFAM 296 322
IPR002885 Pentatricopeptide_rpt TIGRFAM 225 259
IPR002885 Pentatricopeptide_rpt TIGRFAM 260 293
IPR002885 Pentatricopeptide_rpt TIGRFAM 188 220
IPR002885 Pentatricopeptide_rpt Pfam 188 214

No CAZYmes available for this sequence

No external refs found!