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Description : pre-mRNA-processing protein 40C
Gene families : OG_01_0001959 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001959_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os10g34380.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os10g34380.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_178 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_77 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003712 | transcription coregulator activity | ISM | GOs from InterProScan |
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0070063 | RNA polymerase binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR036020 | WW_dom_sf | SUPERFAMILY | 472 | 504 |
| IPR036517 | FF_domain_sf | SUPERFAMILY | 684 | 750 |
| IPR036517 | FF_domain_sf | Gene3D | 688 | 751 |
| IPR002713 | FF_domain | ProSiteProfiles | 924 | 981 |
| IPR045148 | TCRG1-like | PANTHER | 255 | 1072 |
| IPR002713 | FF_domain | ProSiteProfiles | 757 | 812 |
| IPR036517 | FF_domain_sf | SUPERFAMILY | 917 | 986 |
| IPR036517 | FF_domain_sf | Gene3D | 817 | 887 |
| IPR036517 | FF_domain_sf | Gene3D | 752 | 816 |
| IPR036517 | FF_domain_sf | SUPERFAMILY | 749 | 816 |
| IPR001202 | WW_dom | CDD | 523 | 552 |
| IPR001202 | WW_dom | ProSitePatterns | 525 | 550 |
| IPR036020 | WW_dom_sf | SUPERFAMILY | 524 | 556 |
| IPR001202 | WW_dom | ProSiteProfiles | 473 | 500 |
| IPR036517 | FF_domain_sf | SUPERFAMILY | 820 | 882 |
| IPR002713 | FF_domain | Pfam | 760 | 808 |
| IPR002713 | FF_domain | Pfam | 988 | 1045 |
| IPR002713 | FF_domain | Pfam | 926 | 978 |
| IPR002713 | FF_domain | Pfam | 693 | 741 |
| IPR002713 | FF_domain | Pfam | 826 | 872 |
| IPR002713 | FF_domain | ProSiteProfiles | 821 | 875 |
| IPR036517 | FF_domain_sf | SUPERFAMILY | 983 | 1054 |
| IPR001202 | WW_dom | CDD | 473 | 500 |
| IPR002713 | FF_domain | SMART | 983 | 1048 |
| IPR002713 | FF_domain | SMART | 690 | 744 |
| IPR002713 | FF_domain | SMART | 757 | 812 |
| IPR002713 | FF_domain | SMART | 821 | 875 |
| IPR002713 | FF_domain | SMART | 924 | 981 |
| IPR001202 | WW_dom | SMART | 468 | 500 |
| IPR001202 | WW_dom | SMART | 520 | 552 |
| IPR001202 | WW_dom | ProSiteProfiles | 525 | 552 |
| IPR001202 | WW_dom | ProSitePatterns | 473 | 498 |
| IPR002713 | FF_domain | ProSiteProfiles | 690 | 744 |
| IPR001202 | WW_dom | Pfam | 472 | 498 |
| IPR036517 | FF_domain_sf | Gene3D | 921 | 981 |
| IPR036517 | FF_domain_sf | Gene3D | 983 | 1048 |
No CAZYmes available for this sequence
| No external refs found! |