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  5. LOC_Os10g34420.1

LOC_Os10g34420.1


Description : Peptidoglycan-binding LysM domain-containing protein


Gene families : OG_01_0007344 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007344_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os10g34420.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os10g34420.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_283
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_32


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR045030 LYSM1-4 PANTHER 1 368
IPR036779 LysM_dom_sf Gene3D 52 126
IPR036779 LysM_dom_sf SUPERFAMILY 68 113
IPR018392 LysM_dom SMART 69 113
IPR018392 LysM_dom Pfam 70 113
IPR018392 LysM_dom ProSiteProfiles 68 112
IPR018392 LysM_dom CDD 70 112
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM50 40 369 4e-06 70 113
No external refs found!