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  5. LOC_Os10g35240.1

LOC_Os10g35240.1


Description : rna processing factor 2


Gene families : OG_01_0002363 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002363_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os10g35240.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os10g35240.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_290
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_83


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 200 234
IPR011990 TPR-like_helical_dom_sf Gene3D 602 774
IPR011990 TPR-like_helical_dom_sf Gene3D 354 494
IPR011990 TPR-like_helical_dom_sf Gene3D 33 192
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 91 125
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 305 339
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 270 304
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 515 549
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 375 409
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 445 479
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 340 374
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 690 724
IPR002885 Pentatricopeptide_rpt Pfam 441 472
IPR002885 Pentatricopeptide_rpt Pfam 265 298
IPR002885 Pentatricopeptide_rpt Pfam 622 645
IPR002885 Pentatricopeptide_rpt Pfam 158 189
IPR002885 Pentatricopeptide_rpt Pfam 549 597
IPR002885 Pentatricopeptide_rpt Pfam 304 352
IPR002885 Pentatricopeptide_rpt Pfam 480 527
IPR002885 Pentatricopeptide_rpt Pfam 657 697
IPR002885 Pentatricopeptide_rpt Pfam 199 248
IPR002885 Pentatricopeptide_rpt Pfam 374 423
IPR002885 Pentatricopeptide_rpt Pfam 90 138
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 166 454
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 550 584
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 585 619
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 620 654
IPR011990 TPR-like_helical_dom_sf Gene3D 495 601
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 480 514
IPR002885 Pentatricopeptide_rpt TIGRFAM 517 551
IPR002885 Pentatricopeptide_rpt TIGRFAM 693 725
IPR002885 Pentatricopeptide_rpt TIGRFAM 658 691
IPR002885 Pentatricopeptide_rpt TIGRFAM 273 306
IPR002885 Pentatricopeptide_rpt TIGRFAM 447 481
IPR002885 Pentatricopeptide_rpt TIGRFAM 378 411
IPR002885 Pentatricopeptide_rpt TIGRFAM 412 446
IPR002885 Pentatricopeptide_rpt TIGRFAM 93 126
IPR002885 Pentatricopeptide_rpt TIGRFAM 307 341
IPR002885 Pentatricopeptide_rpt TIGRFAM 128 163
IPR002885 Pentatricopeptide_rpt TIGRFAM 202 236
IPR002885 Pentatricopeptide_rpt TIGRFAM 484 515
IPR002885 Pentatricopeptide_rpt TIGRFAM 164 190
IPR002885 Pentatricopeptide_rpt TIGRFAM 237 271
IPR002885 Pentatricopeptide_rpt TIGRFAM 552 586
IPR002885 Pentatricopeptide_rpt TIGRFAM 343 375
IPR002885 Pentatricopeptide_rpt TIGRFAM 623 647
IPR011990 TPR-like_helical_dom_sf Gene3D 193 262
IPR011990 TPR-like_helical_dom_sf Gene3D 263 335
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 410 444
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 162 192
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 126 161
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 655 689
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 235 269

No CAZYmes available for this sequence

No external refs found!