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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0002363 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002363_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os10g35640.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os10g35640.1 | No neighbors in network |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_177 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 124 | 159 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 267 | 301 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 234 | 268 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 374 | 408 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 269 | 303 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 304 | 338 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 91 | 122 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 163 | 191 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 444 | 473 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 340 | 372 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 409 | 442 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 127 | 161 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 199 | 233 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 149 | 257 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 302 | 336 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 442 | 476 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 92 | 121 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 160 | 194 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 369 | 400 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 372 | 406 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 409 | 454 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 231 | 280 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 301 | 349 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 159 | 210 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 337 | 371 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 19 | 148 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 400 | 473 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 331 | 399 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 258 | 330 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 232 | 266 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 197 | 231 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 89 | 123 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 407 | 441 |
No CAZYmes available for this sequence
| No external refs found! |