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  5. LOC_Os10g39640.1

LOC_Os10g39640.1


Description : expansin-like A1


Gene families : OG_01_0000882 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000882_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os10g39640.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os10g39640.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_87
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_25


Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR007117 Expansin_CBD Pfam 161 237
IPR036749 Expansin_CBD_sf Gene3D 153 258
IPR007117 Expansin_CBD ProSiteProfiles 171 254
IPR009009 RlpA-like_DPBB Pfam 69 138
IPR007118 Expan_Lol_pI PRINTS 50 68
IPR007118 Expan_Lol_pI PRINTS 240 254
IPR007118 Expan_Lol_pI PRINTS 199 213
IPR007118 Expan_Lol_pI PRINTS 139 155
IPR007118 Expan_Lol_pI PRINTS 72 90
IPR036749 Expansin_CBD_sf SUPERFAMILY 157 253
IPR007112 Expansin/allergen_DPBB_dom ProSiteProfiles 51 156
IPR036908 RlpA-like_sf Gene3D 23 152
IPR007112 Expansin/allergen_DPBB_dom SMART 69 146
IPR036908 RlpA-like_sf SUPERFAMILY 43 154

No CAZYmes available for this sequence

No external refs found!