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  5. LOC_Os10g40720.1

LOC_Os10g40720.1


Description : expansin B2


Gene families : OG_01_0000116 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000116_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os10g40720.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os10g40720.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_257
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_119


Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM GOs from InterProScan
BP GO:0019953 sexual reproduction ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR007117 Expansin_CBD Pfam 170 251
IPR007117 Expansin_CBD ProSiteProfiles 181 262
IPR005795 LolPI PRINTS 140 155
IPR005795 LolPI PRINTS 218 235
IPR005795 LolPI PRINTS 81 92
IPR005795 LolPI PRINTS 101 111
IPR005795 LolPI PRINTS 118 133
IPR005795 LolPI PRINTS 172 187
IPR005795 LolPI PRINTS 188 203
IPR005795 LolPI PRINTS 238 255
IPR036908 RlpA-like_sf SUPERFAMILY 36 167
IPR009009 RlpA-like_DPBB Pfam 79 158
IPR007112 Expansin/allergen_DPBB_dom ProSiteProfiles 62 168
IPR007118 Expan_Lol_pI PRINTS 61 79
IPR007118 Expan_Lol_pI PRINTS 151 167
IPR007118 Expan_Lol_pI PRINTS 248 262
IPR007118 Expan_Lol_pI PRINTS 41 56
IPR007118 Expan_Lol_pI PRINTS 83 101
IPR007118 Expan_Lol_pI PRINTS 209 223
IPR036749 Expansin_CBD_sf Gene3D 164 263
IPR036908 RlpA-like_sf Gene3D 28 163
IPR007112 Expansin/allergen_DPBB_dom SMART 79 158
IPR036749 Expansin_CBD_sf SUPERFAMILY 169 262

No CAZYmes available for this sequence

No external refs found!