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  5. Sevir.1G159100.1

Sevir.1G159100.1


Description : mitochondrial editing factor 22


Gene families : OG_01_0016344 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016344_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G159100.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G159100.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_23
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_67


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 118 152
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 85 115
IPR002885 Pentatricopeptide_rpt Pfam 320 369
IPR002885 Pentatricopeptide_rpt Pfam 119 165
IPR002885 Pentatricopeptide_rpt Pfam 422 468
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 493 523
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 422 456
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 321 355
IPR002885 Pentatricopeptide_rpt Pfam 490 520
IPR011990 TPR-like_helical_dom_sf Gene3D 13 176
IPR011990 TPR-like_helical_dom_sf Gene3D 270 394
IPR011990 TPR-like_helical_dom_sf Gene3D 395 599
IPR002885 Pentatricopeptide_rpt TIGRFAM 323 356
IPR002885 Pentatricopeptide_rpt TIGRFAM 497 520
IPR002885 Pentatricopeptide_rpt TIGRFAM 425 458
IPR002885 Pentatricopeptide_rpt TIGRFAM 120 153
IPR011990 TPR-like_helical_dom_sf Gene3D 177 269
IPR002885 Pentatricopeptide_rpt Pfam 296 316
IPR002885 Pentatricopeptide_rpt Pfam 90 111
IPR002885 Pentatricopeptide_rpt Pfam 397 417
IPR002885 Pentatricopeptide_rpt Pfam 222 248

No CAZYmes available for this sequence

No external refs found!