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  5. Sevir.1G159500.2

Sevir.1G159500.2


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0017946 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017946_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G159500.2
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G159500.2
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_55
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_25


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 611 642
IPR002885 Pentatricopeptide_rpt Pfam 270 302
IPR002885 Pentatricopeptide_rpt Pfam 509 540
IPR002885 Pentatricopeptide_rpt Pfam 338 369
IPR002885 Pentatricopeptide_rpt Pfam 714 744
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 580 614
IPR002885 Pentatricopeptide_rpt Pfam 748 797
IPR002885 Pentatricopeptide_rpt Pfam 544 592
IPR002885 Pentatricopeptide_rpt Pfam 647 695
IPR002885 Pentatricopeptide_rpt Pfam 442 491
IPR002885 Pentatricopeptide_rpt Pfam 207 252
IPR002885 Pentatricopeptide_rpt Pfam 375 422
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 749 783
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 615 645
IPR011990 TPR-like_helical_dom_sf Gene3D 527 627
IPR011990 TPR-like_helical_dom_sf Gene3D 279 334
IPR011990 TPR-like_helical_dom_sf Gene3D 335 426
IPR011990 TPR-like_helical_dom_sf Gene3D 628 731
IPR011990 TPR-like_helical_dom_sf Gene3D 427 526
IPR011990 TPR-like_helical_dom_sf Gene3D 732 846
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 274 308
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 239 273
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 784 818
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 341 375
IPR002885 Pentatricopeptide_rpt Pfam 312 337
IPR002885 Pentatricopeptide_rpt Pfam 824 842
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 114 575
IPR011990 TPR-like_helical_dom_sf Gene3D 107 267
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 309 339
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 207 237
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 478 512
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 647 681
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 682 716
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 443 477
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 513 543
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 545 579
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 717 747
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 376 410
IPR002885 Pentatricopeptide_rpt TIGRFAM 343 377
IPR002885 Pentatricopeptide_rpt TIGRFAM 242 274
IPR002885 Pentatricopeptide_rpt TIGRFAM 751 785
IPR002885 Pentatricopeptide_rpt TIGRFAM 277 307
IPR002885 Pentatricopeptide_rpt TIGRFAM 547 581
IPR002885 Pentatricopeptide_rpt TIGRFAM 618 642
IPR002885 Pentatricopeptide_rpt TIGRFAM 719 746
IPR002885 Pentatricopeptide_rpt TIGRFAM 445 478
IPR002885 Pentatricopeptide_rpt TIGRFAM 515 545
IPR002885 Pentatricopeptide_rpt TIGRFAM 649 683
IPR002885 Pentatricopeptide_rpt TIGRFAM 209 234
IPR002885 Pentatricopeptide_rpt TIGRFAM 582 616
IPR002885 Pentatricopeptide_rpt TIGRFAM 480 514
IPR002885 Pentatricopeptide_rpt TIGRFAM 684 718
IPR002885 Pentatricopeptide_rpt TIGRFAM 787 820
IPR002885 Pentatricopeptide_rpt TIGRFAM 311 337
IPR002885 Pentatricopeptide_rpt TIGRFAM 378 411

No CAZYmes available for this sequence

No external refs found!