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  5. LOC_Os11g03850.1

LOC_Os11g03850.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0013416 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013416_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os11g03850.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os11g03850.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_34
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_297


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 219 253
IPR002885 Pentatricopeptide_rpt Pfam 183 231
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 149 183
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 184 218
IPR002885 Pentatricopeptide_rpt TIGRFAM 222 254
IPR002885 Pentatricopeptide_rpt TIGRFAM 257 276
IPR002885 Pentatricopeptide_rpt TIGRFAM 186 220
IPR002885 Pentatricopeptide_rpt TIGRFAM 151 185
IPR011990 TPR-like_helical_dom_sf Gene3D 30 210
IPR011990 TPR-like_helical_dom_sf Gene3D 211 278
IPR002885 Pentatricopeptide_rpt Pfam 249 275

No CAZYmes available for this sequence

No external refs found!