LOC_Os11g05570.1

Description : Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Gene families : OG_01_0002227 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002227_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os11g05570.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os11g05570.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_363
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_124

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	ISM	GOs from InterProScan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	ISM	GOs from InterProScan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	None	Extended
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036397	RNaseH_sf	Gene3D	2	186
IPR004649	RNase_H2_suA	TIGRFAM	17	228
IPR001352	RNase_HII/HIII	PANTHER	3	298
IPR012337	RNaseH-like_sf	SUPERFAMILY	15	231
IPR023160	RNase_HII_hlx-loop-hlx_cap_dom	Gene3D	187	234
IPR024567	RNase_HII/HIII_dom	Pfam	17	227

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os11g05570.1

Expression Profile

Co-expression Networks

Functional Annotation