LOC_Os11g08330.1

Description : DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases

Gene families : OG_01_0002808 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002808_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os11g08330.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os11g08330.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_328
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_32

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003887	DNA-directed DNA polymerase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034061	DNA polymerase activity	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036397	RNaseH_sf	Gene3D	313	531
IPR006172	DNA-dir_DNA_pol_B	PRINTS	757	765
IPR006172	DNA-dir_DNA_pol_B	PRINTS	604	617
IPR006172	DNA-dir_DNA_pol_B	PRINTS	696	708
IPR043502	DNA/RNA_pol_sf	SUPERFAMILY	570	980
IPR006172	DNA-dir_DNA_pol_B	SMART	312	771
IPR017964	DNA-dir_DNA_pol_B_CS	ProSitePatterns	759	767
IPR006133	DNA-dir_DNA_pol_B_exonuc	Pfam	138	481
IPR042087	DNA_pol_B_thumb	Gene3D	833	988
IPR025687	Znf-C4pol	Pfam	1015	1086
IPR012337	RNaseH-like_sf	SUPERFAMILY	129	551
IPR006134	DNA-dir_DNA_pol_B_multi_dom	Pfam	545	978
IPR023211	DNA_pol_palm_dom_sf	Gene3D	586	816

No CAZYmes available for this sequence

External Links

No external refs found!