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  5. LOC_Os11g08980.1

LOC_Os11g08980.1


Description : Preprotein translocase SecA family protein


Gene families : OG_01_0001040 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001040_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os11g08980.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os11g08980.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_297
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_105


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding ISM GOs from InterProScan
BP GO:0006605 protein targeting ISM GOs from InterProScan
BP GO:0006886 intracellular protein transport ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
BP GO:0017038 protein import ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011115 SecA_DEAD SMART 73 486
IPR000185 SecA PRINTS 129 153
IPR000185 SecA PRINTS 497 510
IPR000185 SecA PRINTS 460 477
IPR000185 SecA PRINTS 183 193
IPR000185 SecA PRINTS 236 256
IPR000185 SecA PRINTS 167 181
IPR000185 SecA PRINTS 423 445
IPR014001 Helicase_ATP-bd ProSiteProfiles 155 296
IPR027417 P-loop_NTPase SUPERFAMILY 78 499
IPR011115 SecA_DEAD Pfam 83 485
IPR011116 SecA_Wing/Scaffold Pfam 805 1080
IPR000185 SecA Hamap 63 1083
IPR036266 SecA_Wing/Scaffold_sf SUPERFAMILY 809 1090
IPR014018 SecA_motor_DEAD ProSiteProfiles 69 807
IPR027417 P-loop_NTPase Gene3D 74 341
IPR027417 P-loop_NTPase SUPERFAMILY 501 788
IPR011130 SecA_preprotein_X-link_dom SMART 297 442
IPR036670 SecA_X-link_sf SUPERFAMILY 296 389
IPR036670 SecA_X-link_sf SUPERFAMILY 420 451
IPR011130 SecA_preprotein_X-link_dom Pfam 305 388
IPR020937 SecA_CS ProSitePatterns 586 601
IPR044722 SecA_SF2_C CDD 504 775
IPR000185 SecA PANTHER 418 1091
IPR000185 SecA PANTHER 79 389
IPR027417 P-loop_NTPase Gene3D 501 807

No CAZYmes available for this sequence

No external refs found!