1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os11g14430.2

LOC_Os11g14430.2


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0001855 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001855_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os11g14430.2
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os11g14430.2
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_318
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_229


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom Pfam 186 249
IPR000504 RRM_dom Pfam 106 176
IPR000504 RRM_dom Pfam 282 350
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 185 265
IPR000504 RRM_dom ProSiteProfiles 184 266
IPR000504 RRM_dom ProSiteProfiles 280 357
IPR000504 RRM_dom ProSiteProfiles 104 182
IPR035979 RBD_domain_sf SUPERFAMILY 275 386
IPR003954 RRM_dom_euk SMART 105 178
IPR003954 RRM_dom_euk SMART 281 353
IPR035979 RBD_domain_sf SUPERFAMILY 100 269
IPR000504 RRM_dom SMART 185 262
IPR000504 RRM_dom SMART 281 353
IPR000504 RRM_dom SMART 105 178
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 267 400
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 1 184

No CAZYmes available for this sequence

No external refs found!