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  5. LOC_Os11g37090.1

LOC_Os11g37090.1


Description : pumilio 12


Gene families : OG_01_0016104 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016104_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os11g37090.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os11g37090.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_240
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_814


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 603 638
IPR033133 PUM-HD ProSiteProfiles 394 738
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 491 530
IPR011989 ARM-like Gene3D 399 741
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 419 454
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 566 602
IPR001313 Pumilio_RNA-bd_rpt Pfam 538 566
IPR001313 Pumilio_RNA-bd_rpt Pfam 609 640
IPR001313 Pumilio_RNA-bd_rpt Pfam 571 605
IPR001313 Pumilio_RNA-bd_rpt Pfam 643 677
IPR001313 Pumilio_RNA-bd_rpt Pfam 459 493
IPR001313 Pumilio_RNA-bd_rpt Pfam 501 532
IPR001313 Pumilio_RNA-bd_rpt Pfam 684 707
IPR001313 Pumilio_RNA-bd_rpt Pfam 423 457
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 675 712
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 455 490
IPR016024 ARM-type_fold SUPERFAMILY 415 733
IPR033712 Pumilio_RNA-bd CDD 421 733
IPR001313 Pumilio_RNA-bd_rpt ProSiteProfiles 639 674
IPR001313 Pumilio_RNA-bd_rpt SMART 531 566
IPR001313 Pumilio_RNA-bd_rpt SMART 455 490
IPR001313 Pumilio_RNA-bd_rpt SMART 419 454
IPR001313 Pumilio_RNA-bd_rpt SMART 567 602
IPR001313 Pumilio_RNA-bd_rpt SMART 677 712
IPR001313 Pumilio_RNA-bd_rpt SMART 639 674
IPR001313 Pumilio_RNA-bd_rpt SMART 603 638
IPR001313 Pumilio_RNA-bd_rpt SMART 494 530

No CAZYmes available for this sequence

No external refs found!