LOC_Os11g37990.1

Description : CRM family member 3A

Gene families : OG_01_0004438 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004438_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os11g37990.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os11g37990.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_285
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_131

Type	GO Term	Name	Evidence	Source
BP	GO:0000373	Group II intron splicing	ISM	GOs from InterProScan
BP	GO:0000375	RNA splicing, via transesterification reactions	ISM	GOs from InterProScan
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003729	mRNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR035920	YhbY-like_sf	SUPERFAMILY	175	263
IPR001890	RNA-binding_CRM	ProSiteProfiles	590	690
IPR001890	RNA-binding_CRM	ProSiteProfiles	378	475
IPR001890	RNA-binding_CRM	ProSiteProfiles	174	270
IPR035920	YhbY-like_sf	Gene3D	591	691
IPR035920	YhbY-like_sf	Gene3D	174	272
IPR035920	YhbY-like_sf	Gene3D	379	476
IPR035920	YhbY-like_sf	SUPERFAMILY	591	689
IPR001890	RNA-binding_CRM	Pfam	176	259
IPR001890	RNA-binding_CRM	Pfam	593	679
IPR001890	RNA-binding_CRM	Pfam	383	464
IPR045278	CRS1/CFM2/CFM3	PANTHER	32	825
IPR001890	RNA-binding_CRM	SMART	176	259
IPR001890	RNA-binding_CRM	SMART	380	464
IPR001890	RNA-binding_CRM	SMART	592	679
IPR035920	YhbY-like_sf	SUPERFAMILY	380	471

No CAZYmes available for this sequence

External Links

No external refs found!