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  5. LOC_Os11g38170.2

LOC_Os11g38170.2


Description : WD-40 repeat family protein / notchless protein, putative


Gene families : OG_01_0003288 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003288_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os11g38170.2
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os11g38170.2
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_295
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_214


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 153 194
IPR001680 WD40_rpt SMART 277 352
IPR001680 WD40_rpt SMART 146 185
IPR001680 WD40_rpt SMART 189 233
IPR001680 WD40_rpt SMART 398 437
IPR001680 WD40_rpt SMART 236 274
IPR001680 WD40_rpt SMART 104 143
IPR001680 WD40_rpt SMART 440 479
IPR001680 WD40_rpt SMART 356 395
IPR001632 Gprotein_B PRINTS 424 438
IPR001632 Gprotein_B PRINTS 405 421
IPR001632 Gprotein_B PRINTS 461 478
IPR001680 WD40_rpt ProSiteProfiles 405 446
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 337 478
IPR019775 WD40_repeat_CS ProSitePatterns 261 275
IPR001680 WD40_rpt ProSiteProfiles 111 152
IPR019775 WD40_repeat_CS ProSitePatterns 424 438
IPR001680 WD40_rpt ProSiteProfiles 196 242
IPR001680 WD40_rpt ProSiteProfiles 447 480
IPR012972 NLE Pfam 18 77
IPR019775 WD40_repeat_CS ProSitePatterns 130 144
IPR001680 WD40_rpt Pfam 106 143
IPR001680 WD40_rpt Pfam 238 273
IPR001680 WD40_rpt Pfam 278 351
IPR001680 WD40_rpt Pfam 445 478
IPR001680 WD40_rpt Pfam 148 185
IPR001680 WD40_rpt Pfam 400 437
IPR001680 WD40_rpt Pfam 361 395
IPR001680 WD40_rpt Pfam 192 233
IPR001680 WD40_rpt ProSiteProfiles 243 283
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 107 351
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 104 480
IPR020472 G-protein_beta_WD-40_rep PRINTS 130 144
IPR020472 G-protein_beta_WD-40_rep PRINTS 382 396
IPR020472 G-protein_beta_WD-40_rep PRINTS 424 438
IPR001680 WD40_rpt ProSiteProfiles 363 404

No CAZYmes available for this sequence

No external refs found!