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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0007914 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007914_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os11g45410.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os11g45410.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_52 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_20 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 412 | 446 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 5 | 39 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 612 | 820 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 7 | 165 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 109 | 143 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 615 | 649 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 412 | 450 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 210 | 257 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 618 | 662 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 108 | 155 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 514 | 548 |
| IPR032867 | DYW_dom | Pfam | 789 | 874 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 311 | 345 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 367 | 467 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 166 | 265 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 268 | 366 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 471 | 572 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 650 | 685 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 179 | 209 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 210 | 244 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 618 | 650 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 184 | 209 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 212 | 246 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 313 | 346 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 386 | 414 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 8 | 39 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 414 | 447 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 652 | 685 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 111 | 144 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 285 | 311 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 8 | 37 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 516 | 545 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 386 | 411 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 313 | 336 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 588 | 607 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 184 | 209 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 488 | 514 |
No CAZYmes available for this sequence
| No external refs found! |