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  5. LOC_Os11g45590.1

LOC_Os11g45590.1


Description : U2 snRNP auxilliary factor, large subunit, splicing factor


Gene families : OG_01_0000156 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000156_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os11g45590.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os11g45590.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_363
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_164


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
BP GO:0006397 mRNA processing ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR003954 RRM_dom_euk SMART 449 535
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 444 547
IPR000504 RRM_dom SMART 455 535
IPR000504 RRM_dom SMART 336 409
IPR000504 RRM_dom SMART 216 294
IPR035979 RBD_domain_sf SUPERFAMILY 336 540
IPR000504 RRM_dom ProSiteProfiles 335 413
IPR000504 RRM_dom Pfam 337 406
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 326 437
IPR006529 U2AF_lg TIGRFAM 32 547
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 210 311
IPR000504 RRM_dom ProSiteProfiles 215 298
IPR035979 RBD_domain_sf SUPERFAMILY 196 300

No CAZYmes available for this sequence

No external refs found!