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  5. LOC_Os11g47550.1

LOC_Os11g47550.1


Description : chitinase A


Gene families : OG_01_0002054 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002054_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os11g47550.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os11g47550.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_21
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_76


Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001223 Glyco_hydro18_cat ProSiteProfiles 29 289
IPR045321 Cts1-like CDD 30 284
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 26 285
IPR001223 Glyco_hydro18_cat Pfam 47 192
HMM Family HMM Length Query Length e-Value Query Start Query End
GH18 296 290 4.7e-14 49 240
No external refs found!