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  5. LOC_Os11g47580.1

LOC_Os11g47580.1


Description : chitinase A


Gene families : OG_01_0002054 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002054_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os11g47580.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os11g47580.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_187
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_142


Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 31 303
IPR001223 Glyco_hydro18_cat Pfam 38 291
IPR045321 Cts1-like CDD 34 302
IPR001223 Glyco_hydro18_cat ProSiteProfiles 34 304
HMM Family HMM Length Query Length e-Value Query Start Query End
GH18 296 305 2.9e-15 52 254
No external refs found!