LOC_Os11g48090.5

Description : RECQ helicase L2

Gene families : OG_01_0002499 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002499_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os11g48090.5
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os11g48090.5
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_368
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_49

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	ISM	GOs from InterProScan
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006310	DNA recombination	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043138	3'-5' DNA helicase activity	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR018982	RQC_domain	Pfam	482	589
IPR002121	HRDC_dom	ProSiteProfiles	601	680
IPR032284	RecQ_Zn-bd	Pfam	420	475
IPR027417	P-loop_NTPase	Gene3D	47	280
IPR014001	Helicase_ATP-bd	SMART	86	289
IPR002121	HRDC_dom	Pfam	609	669
IPR004589	DNA_helicase_ATP-dep_RecQ	TIGRFAM	83	498
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	92	259
IPR044876	HRDC_dom_sf	Gene3D	602	675
IPR001650	Helicase_C	SMART	327	408
IPR027417	P-loop_NTPase	Gene3D	281	478
IPR036388	WH-like_DNA-bd_sf	Gene3D	481	586
IPR014001	Helicase_ATP-bd	ProSiteProfiles	98	273
IPR001650	Helicase_C	Pfam	305	407
IPR027417	P-loop_NTPase	SUPERFAMILY	129	424
IPR001650	Helicase_C	ProSiteProfiles	298	447

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os11g48090.5

Expression Profile

Co-expression Networks

Functional Annotation