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  5. LOC_Os12g01850.1

LOC_Os12g01850.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0005323 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005323_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os12g01850.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os12g01850.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_350
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_39


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 311 527
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 237 271
IPR002885 Pentatricopeptide_rpt TIGRFAM 239 273
IPR002885 Pentatricopeptide_rpt TIGRFAM 312 339
IPR002885 Pentatricopeptide_rpt TIGRFAM 212 237
IPR002885 Pentatricopeptide_rpt TIGRFAM 340 373
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 136 170
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 475 509
IPR011990 TPR-like_helical_dom_sf Gene3D 189 304
IPR011990 TPR-like_helical_dom_sf Gene3D 28 188
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 307 341
IPR032867 DYW_dom Pfam 512 635
IPR002885 Pentatricopeptide_rpt Pfam 312 339
IPR002885 Pentatricopeptide_rpt Pfam 212 236
IPR002885 Pentatricopeptide_rpt Pfam 239 269
IPR002885 Pentatricopeptide_rpt Pfam 138 157
IPR002885 Pentatricopeptide_rpt Pfam 481 507
IPR002885 Pentatricopeptide_rpt Pfam 110 132
IPR002885 Pentatricopeptide_rpt Pfam 341 370
IPR002885 Pentatricopeptide_rpt Pfam 412 436

No CAZYmes available for this sequence

No external refs found!