LOC_Os12g01910.1

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0009468 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009468_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os12g01910.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os12g01910.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_38
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_182

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006468	protein phosphorylation	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	566	600
IPR002885	Pentatricopeptide_rpt	Pfam	641	664
IPR002885	Pentatricopeptide_rpt	Pfam	54	84
IPR002885	Pentatricopeptide_rpt	Pfam	32	52
IPR002885	Pentatricopeptide_rpt	Pfam	161	189
IPR002885	Pentatricopeptide_rpt	Pfam	464	488
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	52	86
IPR045215	PPR_prot_At1g15510	PANTHER	185	743
IPR045215	PPR_prot_At1g15510	PANTHER	113	205
IPR001245	Ser-Thr/Tyr_kinase_cat_dom	Pfam	728	831
IPR011009	Kinase-like_dom_sf	SUPERFAMILY	739	838
IPR002885	Pentatricopeptide_rpt	Pfam	566	613
IPR002885	Pentatricopeptide_rpt	Pfam	359	406
IPR002885	Pentatricopeptide_rpt	Pfam	258	303
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	28	734
IPR002885	Pentatricopeptide_rpt	TIGRFAM	161	193
IPR002885	Pentatricopeptide_rpt	TIGRFAM	54	88
IPR002885	Pentatricopeptide_rpt	TIGRFAM	568	601
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	360	394
IPR045215	PPR_prot_At1g15510	PANTHER	5	104
IPR011990	TPR-like_helical_dom_sf	Gene3D	520	634
IPR011990	TPR-like_helical_dom_sf	Gene3D	308	417
IPR011990	TPR-like_helical_dom_sf	Gene3D	418	519
IPR011990	TPR-like_helical_dom_sf	Gene3D	21	106
IPR011990	TPR-like_helical_dom_sf	Gene3D	107	210
IPR011990	TPR-like_helical_dom_sf	Gene3D	211	307
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	158	192
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	259	293

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os12g01910.1

Expression Profile

Co-expression Networks

Functional Annotation