LOC_Os12g02380.1

Description : elongation factor P (EF-P) family protein

Gene families : OG_01_0006648 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006648_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os12g02380.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os12g02380.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_351
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_99

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003746	translation elongation factor activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	GOs from InterProScan
BP	GO:0006414	translational elongation	ISM	GOs from InterProScan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	ISM	GOs from InterProScan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001059	Transl_elong_P/YeiP_cen	CDD	116	171
IPR001059	Transl_elong_P/YeiP_cen	Pfam	116	166
IPR001059	Transl_elong_P/YeiP_cen	SMART	112	166
IPR011768	Transl_elongation_fac_P	TIGRFAM	48	229
IPR014722	Rib_uL2_dom2	Gene3D	39	108
IPR015365	Elong-fact-P_C	Pfam	174	228
IPR008991	Translation_prot_SH3-like_sf	SUPERFAMILY	48	107
IPR013852	Transl_elong_P/YeiP_CS	ProSitePatterns	194	213
IPR011768	Transl_elongation_fac_P	Hamap	46	229
IPR012340	NA-bd_OB-fold	SUPERFAMILY	173	229
IPR015365	Elong-fact-P_C	CDD	174	228
IPR020599	Transl_elong_fac_P/YeiP	PANTHER	32	229
IPR012340	NA-bd_OB-fold	SUPERFAMILY	110	174
IPR013185	Transl_elong_KOW-like	Pfam	48	104
IPR015365	Elong-fact-P_C	SMART	174	228

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os12g02380.1

Expression Profile

Co-expression Networks

Functional Annotation