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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0006439 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006439_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os12g05640.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os12g05640.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_83 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_33 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 651 | 685 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 406 | 440 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 195 | 229 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 503 | 573 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 643 | 713 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 363 | 433 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 574 | 642 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 434 | 502 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 299 | 362 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 336 | 370 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 83 | 298 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 332 | 364 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 511 | 545 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 615 | 664 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 511 | 558 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 370 | 419 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 229 | 280 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 546 | 580 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 616 | 650 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 583 | 613 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 373 | 685 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 429 | 484 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 371 | 405 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 267 | 301 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 581 | 615 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 441 | 475 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 230 | 260 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 653 | 686 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 303 | 337 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 548 | 581 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 338 | 371 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 444 | 477 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 269 | 297 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 618 | 651 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 513 | 547 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 373 | 406 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 232 | 260 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 199 | 230 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 409 | 442 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 583 | 617 |
No CAZYmes available for this sequence
| No external refs found! |