LOC_Os12g05840.1

Description : RmlC-like cupins superfamily protein

Gene families : OG_01_0001095 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001095_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os12g05840.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os12g05840.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_21
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_233

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0030145	manganese ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR019780	Germin_Mn-BS	ProSitePatterns	106	119
IPR001929	Germin	PRINTS	180	195
IPR001929	Germin	PRINTS	146	166
IPR001929	Germin	PRINTS	111	131
IPR014710	RmlC-like_jellyroll	Gene3D	23	226
IPR006045	Cupin_1	Pfam	63	216
IPR006045	Cupin_1	SMART	62	217
IPR011051	RmlC_Cupin_sf	SUPERFAMILY	24	223

No CAZYmes available for this sequence

External Links

No external refs found!