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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0012783 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012783_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os12g06070.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os12g06070.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_157 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 121 | 155 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 389 | 554 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 275 | 388 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 323 | 357 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 292 | 322 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 180 | 274 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 322 | 370 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 121 | 168 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 48 | 179 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 394 | 424 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 276 | 461 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 398 | 421 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 297 | 325 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 224 | 257 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 92 | 122 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 123 | 155 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 196 | 221 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 92 | 120 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 224 | 253 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 90 | 120 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 222 | 256 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 392 | 421 |
| IPR032867 | DYW_dom | Pfam | 496 | 620 |
No CAZYmes available for this sequence
| No external refs found! |