LOC_Os12g10580.1

Description : ribulose-bisphosphate carboxylases

Gene families : OG_01_0010725 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010725_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os12g10580.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os12g10580.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_12
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_79

Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	ISM	GOs from InterProScan
BP	GO:0006412	translation	ISM	GOs from InterProScan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015977	carbon fixation	ISM	GOs from InterProScan
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	None	Extended
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	ISM	GOs from InterProScan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000589	Ribosomal_uS15	CDD	419	487
IPR036376	RuBisCO_lsu_C_sf	Gene3D	262	351
IPR017443	RuBisCO_lsu_fd_N	Pfam	24	144
IPR000589	Ribosomal_uS15	SMART	416	489
IPR036376	RuBisCO_lsu_C_sf	Gene3D	149	261
IPR009068	uS15_NS1_RNA-bd_sf	SUPERFAMILY	418	489
IPR033966	RuBisCO	PANTHER	1	246
IPR033966	RuBisCO	PANTHER	280	326
IPR036422	RuBisCO_lsu_N_sf	SUPERFAMILY	9	149
IPR000589	Ribosomal_uS15	ProSitePatterns	440	470
IPR036376	RuBisCO_lsu_C_sf	SUPERFAMILY	148	350
IPR005290	Ribosomal_uS15_bac-type	TIGRFAM	418	490
IPR000685	RuBisCO_lsu_C	Pfam	154	250
IPR000685	RuBisCO_lsu_C	Pfam	281	326
IPR020878	RuBisCo_large_chain_AS	ProSitePatterns	196	204
IPR005290	Ribosomal_uS15_bac-type	Hamap	396	490
IPR036422	RuBisCO_lsu_N_sf	Gene3D	9	147
IPR000589	Ribosomal_uS15	Pfam	418	489

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os12g10580.1

Expression Profile

Co-expression Networks

Functional Annotation