LOC_Os12g10850.1

Description : HhH-GPD base excision DNA repair family protein

Gene families : OG_01_0009060 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009060_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os12g10850.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os12g10850.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_176
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_82

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006284	base-excision repair	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	ISM	GOs from InterProScan
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR044298	MIG/MutY	PANTHER	23	469
IPR029119	MutY_C	CDD	323	450
IPR023170	HhH_base_excis_C	Gene3D	57	272
IPR003265	HhH-GPD_domain	Pfam	99	229
IPR003265	HhH-GPD_domain	CDD	95	250
IPR029119	MutY_C	Pfam	323	447
IPR011257	DNA_glycosylase	SUPERFAMILY	56	274
IPR003265	HhH-GPD_domain	SMART	103	252
IPR004035	Endouclease-III_FeS-bd_BS	ProSitePatterns	254	270
IPR015797	NUDIX_hydrolase-like_dom_sf	SUPERFAMILY	288	449

No CAZYmes available for this sequence

External Links

No external refs found!