LOC_Os12g19370.1

Description : helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding

Gene families : OG_01_0002285 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002285_tree

Sequence : cds (download), rna (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os12g19370.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os12g19370.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_52
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_29

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003887	DNA-directed DNA polymerase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	ISM	GOs from InterProScan
BP	GO:0006261	DNA-templated DNA replication	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0034061	DNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001650	Helicase_C	SMART	824	906
IPR002298	DNA_polymerase_A	PANTHER	510	2032
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	517	691
IPR036397	RNaseH_sf	Gene3D	1412	1654
IPR001650	Helicase_C	ProSiteProfiles	755	947
IPR043502	DNA/RNA_pol_sf	SUPERFAMILY	1635	2031
IPR001098	DNA-dir_DNA_pol_A_palm_dom	SMART	1791	2013
IPR014001	Helicase_ATP-bd	SMART	488	716
IPR001098	DNA-dir_DNA_pol_A_palm_dom	Pfam	1665	2031
IPR027417	P-loop_NTPase	Gene3D	483	706
IPR014001	Helicase_ATP-bd	ProSiteProfiles	515	707
IPR027417	P-loop_NTPase	Gene3D	707	933
IPR001650	Helicase_C	Pfam	754	906
IPR027417	P-loop_NTPase	SUPERFAMILY	517	920
IPR002298	DNA_polymerase_A	PRINTS	1946	1962
IPR002298	DNA_polymerase_A	PRINTS	1774	1796

No CAZYmes available for this sequence

External Links

No external refs found!

LOC_Os12g19370.1

Expression Profile

Co-expression Networks

Functional Annotation