- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0002475 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002475_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.5G102400.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.5G102400.1 | |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32 | |
| Cluster | Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_40 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 403 | 437 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 154 | 327 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 543 | 572 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 508 | 540 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 370 | 404 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 441 | 473 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 368 | 402 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 540 | 574 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 365 | 395 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 486 | 616 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 505 | 539 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 438 | 482 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 407 | 435 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 508 | 536 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 305 | 326 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 543 | 572 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 336 | 362 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 438 | 472 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 328 | 485 |
No CAZYmes available for this sequence
| No external refs found! |