LOC_Os12g29990.1

Description : glycoprotease 1

Gene families : OG_01_0005073 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005073_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os12g29990.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os12g29990.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_245
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_131

Type	GO Term	Name	Evidence	Source
BP	GO:0002949	tRNA threonylcarbamoyladenosine modification	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0070525	tRNA threonylcarbamoyladenosine metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000905	Gcp-like_dom	Pfam	92	396
IPR043129	ATPase_NBD	SUPERFAMILY	72	397
IPR022450	TsaD	Hamap	70	429
IPR017861	KAE1/TsaD	PRINTS	145	165
IPR017861	KAE1/TsaD	PRINTS	73	86
IPR017861	KAE1/TsaD	PRINTS	166	185
IPR017861	KAE1/TsaD	PRINTS	352	361
IPR017861	KAE1/TsaD	PRINTS	200	212
IPR017861	KAE1/TsaD	PRINTS	223	244
IPR017861	KAE1/TsaD	TIGRFAM	73	395
IPR000905	Gcp-like_dom	PANTHER	67	445
IPR022450	TsaD	TIGRFAM	72	402
IPR022450	TsaD	PANTHER	67	445

No CAZYmes available for this sequence

External Links

No external refs found!