- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : pumilio 12
Gene families : OG_01_0016104 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016104_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os12g30520.1 | |
| Neighborhood | Oryza sativa coexpression network - Wang et al (2014): LOC_Os12g30520.1 | |
| Cluster | Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_240 | |
| Cluster | Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_24 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR033133 | PUM-HD | ProSiteProfiles | 418 | 766 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 630 | 665 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 482 | 518 |
| IPR011989 | ARM-like | Gene3D | 433 | 763 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 666 | 701 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 702 | 740 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 521 | 557 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 565 | 593 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 670 | 704 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 486 | 520 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 527 | 559 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 451 | 484 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 714 | 739 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 635 | 653 |
| IPR001313 | Pumilio_RNA-bd_rpt | Pfam | 599 | 631 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 446 | 481 |
| IPR016024 | ARM-type_fold | SUPERFAMILY | 442 | 761 |
| IPR001313 | Pumilio_RNA-bd_rpt | ProSiteProfiles | 593 | 629 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 666 | 701 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 594 | 629 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 558 | 593 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 521 | 557 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 482 | 517 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 446 | 481 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 630 | 665 |
| IPR001313 | Pumilio_RNA-bd_rpt | SMART | 704 | 739 |
| IPR033712 | Pumilio_RNA-bd | CDD | 440 | 761 |
No CAZYmes available for this sequence
| No external refs found! |