LOC_Os12g38210.1

Description : plant U-box 13

Gene families : OG_01_0008035 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008035_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os12g38210.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os12g38210.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_376
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_140

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	ISM	GOs from InterProScan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016746	acyltransferase activity	None	Extended
MF	GO:0016755	aminoacyltransferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043687	post-translational protein modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR016024	ARM-type_fold	SUPERFAMILY	249	533
IPR000225	Armadillo	Pfam	321	359
IPR000225	Armadillo	Pfam	280	318
IPR000225	Armadillo	Pfam	363	400
IPR003613	Ubox_domain	ProSiteProfiles	153	227
IPR011989	ARM-like	Gene3D	367	528
IPR000225	Armadillo	SMART	320	360
IPR000225	Armadillo	SMART	486	527
IPR000225	Armadillo	SMART	443	483
IPR000225	Armadillo	SMART	361	401
IPR000225	Armadillo	SMART	279	319
IPR003613	Ubox_domain	Pfam	154	224
IPR013083	Znf_RING/FYVE/PHD	Gene3D	153	227
IPR003613	Ubox_domain	SMART	157	220
IPR045210	RING-Ubox_PUB	CDD	158	200
IPR000225	Armadillo	ProSiteProfiles	290	332
IPR011989	ARM-like	Gene3D	249	366

No CAZYmes available for this sequence

External Links

No external refs found!