1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os12g40080.1

LOC_Os12g40080.1


Description : AP2/B3-like transcriptional factor family protein


Gene families : OG_01_0024000 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0024000_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os12g40080.1
Neighborhood Oryza sativa coexpression network - Wang et al (2014): LOC_Os12g40080.1
Cluster Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_57
Cluster Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_172


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR015300 DNA-bd_pseudobarrel_sf Gene3D 19 119
IPR003340 B3_DNA-bd CDD 235 316
IPR003340 B3_DNA-bd SMART 237 334
IPR003340 B3_DNA-bd SMART 388 487
IPR003340 B3_DNA-bd SMART 27 117
IPR003340 B3_DNA-bd ProSiteProfiles 389 487
IPR015300 DNA-bd_pseudobarrel_sf SUPERFAMILY 21 119
IPR015300 DNA-bd_pseudobarrel_sf SUPERFAMILY 381 487
IPR015300 DNA-bd_pseudobarrel_sf Gene3D 214 329
IPR015300 DNA-bd_pseudobarrel_sf Gene3D 369 490
IPR003340 B3_DNA-bd ProSiteProfiles 236 331
IPR003340 B3_DNA-bd ProSiteProfiles 24 117
IPR015300 DNA-bd_pseudobarrel_sf SUPERFAMILY 230 329
IPR044837 REM16-like PANTHER 5 486
IPR003340 B3_DNA-bd CDD 25 115
IPR003340 B3_DNA-bd CDD 386 468
IPR003340 B3_DNA-bd Pfam 27 113
IPR003340 B3_DNA-bd Pfam 400 486
IPR003340 B3_DNA-bd Pfam 242 323

No CAZYmes available for this sequence

No external refs found!