LOC_Os12g40090.1

Description : AP2/B3-like transcriptional factor family protein

Gene families : OG_01_0009845 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009845_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Oryza sativa coexpression network - v0.2 (X-meeting 2023): LOC_Os12g40090.1
Neighborhood	Oryza sativa coexpression network - Wang et al (2014): LOC_Os12g40090.1
Cluster	Oryza sativa HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_25
Cluster	Oryza sativa HCCA coexpression clusters - Wang et al (2014): Cluster_14

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003340	B3_DNA-bd	SMART	227	326
IPR003340	B3_DNA-bd	SMART	8	102
IPR003340	B3_DNA-bd	Pfam	17	93
IPR003340	B3_DNA-bd	Pfam	227	324
IPR015300	DNA-bd_pseudobarrel_sf	Gene3D	1	104
IPR003340	B3_DNA-bd	ProSiteProfiles	227	326
IPR015300	DNA-bd_pseudobarrel_sf	Gene3D	209	327
IPR015300	DNA-bd_pseudobarrel_sf	SUPERFAMILY	3	104
IPR003340	B3_DNA-bd	CDD	7	100
IPR003340	B3_DNA-bd	CDD	225	321
IPR015300	DNA-bd_pseudobarrel_sf	SUPERFAMILY	221	322
IPR003340	B3_DNA-bd	ProSiteProfiles	5	102

No CAZYmes available for this sequence

External Links

No external refs found!